diff --git a/bootstrap/apps/kustomization-baikal.yaml b/bootstrap/apps/kustomization-baikal.yaml
index 9da358f..c57fc54 100644
--- a/bootstrap/apps/kustomization-baikal.yaml
+++ b/bootstrap/apps/kustomization-baikal.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/baikal
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-calibre-web.yaml b/bootstrap/apps/kustomization-calibre-web.yaml
index 3748867..1dd6130 100644
--- a/bootstrap/apps/kustomization-calibre-web.yaml
+++ b/bootstrap/apps/kustomization-calibre-web.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/calibre-web
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-gitea.yaml b/bootstrap/apps/kustomization-gitea.yaml
index 8478d54..4e922cd 100644
--- a/bootstrap/apps/kustomization-gitea.yaml
+++ b/bootstrap/apps/kustomization-gitea.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/gitea
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-hoarder.yaml b/bootstrap/apps/kustomization-hoarder.yaml
index b8eda25..5022b87 100644
--- a/bootstrap/apps/kustomization-hoarder.yaml
+++ b/bootstrap/apps/kustomization-hoarder.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/hoarder
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-homeassistant.yaml b/bootstrap/apps/kustomization-homeassistant.yaml
index 82976f1..b043ba2 100644
--- a/bootstrap/apps/kustomization-homeassistant.yaml
+++ b/bootstrap/apps/kustomization-homeassistant.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/homeassistant
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-immich.yaml b/bootstrap/apps/kustomization-immich.yaml
index eb1995d..1a57a07 100644
--- a/bootstrap/apps/kustomization-immich.yaml
+++ b/bootstrap/apps/kustomization-immich.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/immich
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-keycloak.yaml b/bootstrap/apps/kustomization-keycloak.yaml
index 996a48e..66700bd 100644
--- a/bootstrap/apps/kustomization-keycloak.yaml
+++ b/bootstrap/apps/kustomization-keycloak.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/keycloak
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-kube-prometheus-stack.yaml b/bootstrap/apps/kustomization-kube-prometheus-stack.yaml
index c76ad44..a2577b9 100644
--- a/bootstrap/apps/kustomization-kube-prometheus-stack.yaml
+++ b/bootstrap/apps/kustomization-kube-prometheus-stack.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/kube-prometheus-stack
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-media.yaml b/bootstrap/apps/kustomization-media.yaml
index f00b4c9..5cb2340 100644
--- a/bootstrap/apps/kustomization-media.yaml
+++ b/bootstrap/apps/kustomization-media.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/media
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-michaelthomson.yaml b/bootstrap/apps/kustomization-michaelthomson.yaml
index 18d69e1..43ccbe7 100644
--- a/bootstrap/apps/kustomization-michaelthomson.yaml
+++ b/bootstrap/apps/kustomization-michaelthomson.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/michaelthomson
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-nextcloud.yaml b/bootstrap/apps/kustomization-nextcloud.yaml
index e58ebe8..42f6271 100644
--- a/bootstrap/apps/kustomization-nextcloud.yaml
+++ b/bootstrap/apps/kustomization-nextcloud.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/nextcloud
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-ntfy.yaml b/bootstrap/apps/kustomization-ntfy.yaml
index 02c6e32..92d7a90 100644
--- a/bootstrap/apps/kustomization-ntfy.yaml
+++ b/bootstrap/apps/kustomization-ntfy.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/ntfy
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-pihole.yaml b/bootstrap/apps/kustomization-pihole.yaml
index 865da31..541b2ef 100644
--- a/bootstrap/apps/kustomization-pihole.yaml
+++ b/bootstrap/apps/kustomization-pihole.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/pihole
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-plane.yaml b/bootstrap/apps/kustomization-plane.yaml
index ec3c5f0..97ee7e5 100644
--- a/bootstrap/apps/kustomization-plane.yaml
+++ b/bootstrap/apps/kustomization-plane.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/plane
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-roundcube.yaml b/bootstrap/apps/kustomization-roundcube.yaml
index 70f2821..e0986de 100644
--- a/bootstrap/apps/kustomization-roundcube.yaml
+++ b/bootstrap/apps/kustomization-roundcube.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/roundcube
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-syncthing.yaml b/bootstrap/apps/kustomization-syncthing.yaml
index 561b9f6..784a0f0 100644
--- a/bootstrap/apps/kustomization-syncthing.yaml
+++ b/bootstrap/apps/kustomization-syncthing.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/syncthing
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-uptime-kuma.yaml b/bootstrap/apps/kustomization-uptime-kuma.yaml
index c8856fe..e084ddf 100644
--- a/bootstrap/apps/kustomization-uptime-kuma.yaml
+++ b/bootstrap/apps/kustomization-uptime-kuma.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/uptime-kuma
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-vaultwarden.yaml b/bootstrap/apps/kustomization-vaultwarden.yaml
index 5cfc226..2a51677 100644
--- a/bootstrap/apps/kustomization-vaultwarden.yaml
+++ b/bootstrap/apps/kustomization-vaultwarden.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/vaultwarden
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-wg-easy.yaml b/bootstrap/apps/kustomization-wg-easy.yaml
index 62880af..4c1c244 100644
--- a/bootstrap/apps/kustomization-wg-easy.yaml
+++ b/bootstrap/apps/kustomization-wg-easy.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/wg-easy
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository
diff --git a/bootstrap/apps/kustomization-woodpecker.yaml b/bootstrap/apps/kustomization-woodpecker.yaml
index b9c934e..c88f079 100644
--- a/bootstrap/apps/kustomization-woodpecker.yaml
+++ b/bootstrap/apps/kustomization-woodpecker.yaml
@@ -6,7 +6,7 @@ metadata:
 spec:
   interval: 15m
   path: ./apps/woodpecker
-  prune: false # remove any elements later removed from the above path
+  prune: true # remove any elements later removed from the above path
   wait: true
   sourceRef:
     kind: GitRepository